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It accepts three-column tab-separated text files storing chromatin interaction matrices in a sparse matrix format which are available from several sources.

. HiCcompare is designed to give the user the ability to perform a comparative analysis on the 3-Dimensional structure of the genomes of cells in different biological states. Novel DNA or amino acid sequences should be submitted to a public database such as GenBank or the European Molecular Biology Laboratory EMBL and the accession number quoted. An icon used to represent a menu that can be toggled by interacting with this icon.

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